Keep  Track of Pandemy with nCOV Analyser!

Upload & Analyse – without a Bioinformatician!

nCOV Analyser

nCOV19 Analyser is a customized pipeline for detection of SARS-CoV-2 based on Oxford Nanopore sequencing technology which utilizes the benefits of long reads. nCOV19 Analyser aligns the reads to SARS-CoV-2 reference genome, calls variants, and generates a consensus genome sequence. It then determines lineage, clade and phylogenetic tree information of sample using Pangolin and NextClade. All the information with its data and QC metric files gets summarized in one extensive html report for easy viewing.

Inside the Software

Easy to View – One File Format (Excel & Fasta)



Phylogenetic Tree

CNV Diagram

The diagram shows chromosome based copy number variants. While dark blue denotes loss, dark red denotes gain.

Mapping Quality Across Reference

Quality of reads mapped to the reference genome.

Geonome Coverage Histogram

Coverage distribution of mapped reads.

Genome Coverage Across Reference

Line plot of coverage for each base across reference genome.

Mapped Reads GC-Content Distribution

GC-content distribution across the mapped reads.

Duplication Rate Histogram

Duplication rates of each read.


Built-in Reference Genome for SARS-CoV-2
Long Read and High Coverage Sequencing of SARS-CoV-2
Map/Align and Variant Calling
Stats & Plots of Coverage and QC Metrics for Samples
Pangolin Lineage Analysis, and NextClade Clade Analysis
Nextstrain Phylogenetic Tree Analysis
Detailed Excel Reports Generation of Samples
Detailed HTML Interactive Report of Samples
GISAID Formatted Excel Report Generation

After Sample Sequencing and Analysis Following Results Are Provided for Each Sample by nCOV19 Analyser:


Raw Reads (Fastq format)


Consensus Genome Sequence (FNA format)


List of SNPs/Indels Compared to NC_045512.2 (VCF format)


Avarage Depth


Quality Control (Passed/Failed)


WHO Labels for VOI/VOC


Cluster Identification with Letter Codes


Graphical Illustrations of Statistical Analyzes


A Report Page Containing All Summary Informations (HTML format)


Alignment File Compared to NC_045512.2 (BAM format)


Gene and Amino Acid Based Alteration List


Phylogenetic Tree File (JSON format)


Consensus Genome Sequence (FASTA format)


Pango Lineage

Contact us now!

From customized bioinformatics analysis to innovative software tools, and Next Genereation Sequencing devices we provide everything you need to accelerate your research. Explore our services and products today. Contact us to schedule a meeting with our experts and achieve your research goals. Together, we can make a difference. 

Expert Consultancy

When you contact us, you can discover the most suitable solutions for your projects through one-to-one meetings with our expert consultants.

Customized Services

With services and products tailored specifically to your needs, we will accelerate your research processes and help you achieve your goals in less time.